Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2237007 | chr4:3235450 | T/C | 8.47E-5 | 483 | 16.83 | 14.7 | 14.73 | KM Plot |
| THCA | rs2239725 | chr4:3305739 | C/T | 0.000197 | 485 | 12.57 | 15.32 | 16.87 | KM Plot |
| THCA | rs2239891 | chr12:58112437 | C/A | 0.000172 | 481 | 14.9 | 18.03 | 16.8 | KM Plot |
| THCA | rs2240229 | chr19:15853080 | G/A | 0.000293 | 490 | 16.33 | 14.93 | 19.13 | KM Plot |
| THCA | rs2244916 | chr10:71969133 | C/T | 7.91E-6 | 490 | 14.43 | 13.93 | 16.63 | KM Plot |
| THCA | rs2245150 | chr15:54235139 | C/T | 5.66E-12 | 489 | 15.63 | 17.73 | 11.8 | KM Plot |
| THCA | rs2248121 | chr21:37455124 | A/G | 0.000122 | 478 | 16.63 | 14.33 | 9.73 | KM Plot |
| THCA | rs2248703 | chr15:54227364 | A/C | 2.22E-16 | 482 | 15.63 | 17.83 | 10.97 | KM Plot |
| THCA | rs2263564 | chr15:54233713 | A/G | 4.68E-12 | 490 | 15.63 | 17.83 | 11.8 | KM Plot |
| THCA | rs2269477 | chr4:3184464 | G/T | 8.85E-5 | 489 | 16.8 | 14.13 | 14.3 | KM Plot |
| THCA | rs2269478 | chr4:3234828 | G/T | 1.4E-5 | 484 | 17 | 14.47 | 14.93 | KM Plot |
| THCA | rs2269499 | chr4:3239702 | C/T | 8.48E-5 | 490 | 16.8 | 14.03 | 14.73 | KM Plot |
| THCA | rs2271444 | chr1:234541622 | A/C | 2.18E-5 | 490 | 10.1 | 16.22 | 16.22 | KM Plot |
| THCA | rs2271688 | chr12:50259529 | A/C | 0.000306 | 490 | 16.8 | 15.33 | 16.15 | KM Plot |
| THCA | rs2271699 | chr10:71868616 | A/G | 3.64E-13 | 490 | 16.63 | 13.97 | 8.55 | KM Plot |